You can ask for a account confirmation from the builder mentioning the amount of service tax and VAT collected from you and if you feel that he has not submitted the amount or overcharged you just submit the details with the VAT/service tax department.
You as a consumer can't do anything as such because you are not required to claim credit of such Vat or service tax as same is for personal use.
All you can do is ask the authorities that the developer has collected more amount from you and if they feel that you are correct they might reimburse you but in normal cases where the department itself finds that one has collected some amount in name of taxes and not submitted it to government they collect the same from them and even charge interest and penalty on same.
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